PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g10415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 662aa    MW: 72581.3 Da    PI: 7.0806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g10415.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07275298226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 ++C+ f++ G C++Gd C +aHg
  Peaxi162Scf00003g10415.1 275 SSVPCPEFRK-GACQRGDMCEYAHG 298
                               5689******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.9E-189153IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-179139IPR020683Ankyrin repeat-containing domain
SMARTSM0024838001040IPR002110Ankyrin repeat
PfamPF127962.2E-953126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.48457132IPR020683Ankyrin repeat-containing domain
CDDcd002044.84E-1557135No hitNo description
SMARTSM002480.0345787IPR002110Ankyrin repeat
PROSITE profilePS5008812.66392127IPR002110Ankyrin repeat
SMARTSM002489.2E-492124IPR002110Ankyrin repeat
PRINTSPR014155.6E-593108IPR002110Ankyrin repeat
PRINTSPR014155.6E-5111125IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.5E-4272300IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77274300IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6275298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5306336IPR000571Zinc finger, CCCH-type
SMARTSM0035627308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MNHQTVETED TFTSLLECAA NNEIDAFERW IERDLSSVHE VGLWYGRQKG SKQMVLEHRT  60
PLMVAAIYGS IDILVLILSL PGGDVNHSCG RDNSTALHCA ASGGSLNAAD AIKLLLEAGA  120
DPNFKDANGH RPRDVIVVSP KFHTMKSCLE NLLKTDAIGD CNLRLSIATS RSNSPPLSPS  180
PGNRSPSSAS DTTSSPRSAK SNDLPMHLTL EEKEYPIDPS LPDIKNSIYT TDEFRMFSFK  240
IRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSSVPCP EFRKGACQRG DMCEYAHGVF  300
ECWLHPAQYR TRICKDGTEC NRRVCFFAHT QEELRPLYVS TGYVPSPRSN TSAANAIDFA  360
AARGLIPGSP SSVSVMSPSP FTPPMSPSAN GVSNMVGWPQ QNVPALHLPG SNLQSSRLCV  420
NANSSNRSVR PKTLTPSNLE DLFFAESSSP RYPEQALAQA VFSPTHSSAL FNQFQQQQAM  480
SSPINTKFSP KNADNRLLQA SFGVPSSRKM SPRGMEPISP MSSRVSILSR SDKQHQFRSL  540
SSRDLGSSAS AIVGSPSDTW SNWGTATGKP DWAVNTEELG KLRRSSSFEL ANNGEEPDLS  600
WVQSLVKEPP QEIKDKSASR VIGLTGAGAD INEGSTSISQ IEQLDQLGAW MEQMKLDQLI  660
AQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781965.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0V0IT350.0A0A0V0IT35_SOLCH; Putative zinc finger CCCH domain-containing protein 30-like
TrEMBLM1AEI80.0M1AEI8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain